#! /bin/bash

#
# Perform QC on BAM files produced by tophat
#


cd /exports/work/vet_roslin_nextgen/dario/tophat/output/
fastqc 20110202_rnaseq_am_ctrl/accepted_hits.bam \
       20110202_rnaseq_am_lps/accepted_hits.bam \
       20110202_rnaseq_bmdm_ctrl/accepted_hits.bam \
       20110202_rnaseq_bmdm_lps/accepted_hits.bam

